Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
conditional KO Rb MEF
cell type
MEFs
strain
mixed B6; 129 background
gfp/cre-infected
GFP
4f
with 4F
chip antibody
Input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
65704046
Reads aligned (%)
73.8
Duplicates removed (%)
16.1
Number of peaks
697 (qval < 1E-05)

mm9

Number of total reads
65704046
Reads aligned (%)
73.5
Duplicates removed (%)
16.0
Number of peaks
756 (qval < 1E-05)

Base call quality data from DBCLS SRA