Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Lung
Cell type
Lung
MeSH Description
Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Attributes by original data submitter

Sample

tissue
lung
age
0 day
donor ID
ENCDO469XMJ
dev stage
postnatal
sample type
tissue
sex
pooled male and female
health state
healthy
lab
Len Pennacchio, LBNL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
document: https://www.encodeproject.org/documents/89795b31-e65a-42ca-9d7b-d75196f6f4b3/@@download/attachment/Ren_Chromatin_Immunoprecipitation.pdf document: https://www.encodeproject.org/documents/4f73fbc3-956e-47ae-aa2d-41a7df552c81/@@download/attachment/Ren_ChIP_Library_Preparation_v060614.pdf document: https://www.encodeproject.org/documents/3125496b-c833-4414-bf5f-84dd633eb30d/@@download/attachment/Ren_Tissue_Fixation_and_Sonication_v060614.pdf See ENCODE portal

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
31037498
Reads aligned (%)
97.5
Duplicates removed (%)
12.2
Number of peaks
615 (qval < 1E-05)

mm9

Number of total reads
31037498
Reads aligned (%)
97.3
Duplicates removed (%)
12.2
Number of peaks
709 (qval < 1E-05)

Base call quality data from DBCLS SRA