Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
TRExBCBL1-RTA cells
cell type
KSHV infected Body Cavity Based Lymphoma Cells
antibody
none, Input DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lytic cells were cross-linked using formaldehyde to fix the protein-DNA for ChIP assay Chromatins were immunoprecipitated using anti-H4R3symmtreic antibody by following standard ChIP protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
353270
Reads aligned (%)
69.9
Duplicates removed (%)
2.8
Number of peaks
1 (qval < 1E-05)

hg19

Number of total reads
353270
Reads aligned (%)
69.4
Duplicates removed (%)
2.9
Number of peaks
3 (qval < 1E-05)

Base call quality data from DBCLS SRA