SRX182684
GSM997542: P-Ser2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A_P-Ser2_ChIP-seq
cell line
MCF10A
cell type
breast epithelial cells
sample type
ChIP-seq
molecule subtype
immunoprecipitated DNA
chip-seq antibody
anti-P-ser2 RNAPII rabbit polyclonal
chip-seq antibody vendor
Bethyl

Sequenced DNA Library

library_name
GSM997542: P-Ser2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35396009
Reads aligned (%)
98.4
Duplicates removed (%)
4.7
Number of peaks
3735 (qval < 1E-05)

hg19

Number of total reads
35396009
Reads aligned (%)
97.5
Duplicates removed (%)
6.0
Number of peaks
3686 (qval < 1E-05)

Base call quality data from DBCLS SRA