Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRCA1

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

source_name
MCF10A_BRCA1_ChIP-seq
cell line
MCF10A
cell type
breast epithelial cells
sample type
ChIP-seq
molecule subtype
immunoprecipitated DNA
chip-seq antibody
anti-BRCA1 rabbit polyclonal I-20
chip-seq antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM997540: BRCA1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
18878514
Reads aligned (%)
78.9
Duplicates removed (%)
17.4
Number of peaks
6402 (qval < 1E-05)

hg38

Number of total reads
18878514
Reads aligned (%)
80.8
Duplicates removed (%)
16.0
Number of peaks
6465 (qval < 1E-05)

Base call quality data from DBCLS SRA