Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Blood
Cell type
BCBL1
NA
NA

Attributes by original data submitter

Sample

source_name
TRExBCBL1-RTA cells
cell type
KSHV infected Body Cavity Based Lymphoma Cells
protocol
RTA protein is under tet-inducible promoter
fraction
Input DNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
lytic cells were cross-linked using formaldehyde to fix the protein-DNA for ChIP assay The libraries were constructed using Bioo scientific ChIP sequencing kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
7175295
Reads aligned (%)
82.6
Duplicates removed (%)
4.8
Number of peaks
139 (qval < 1E-05)

hg19

Number of total reads
7175295
Reads aligned (%)
82.0
Duplicates removed (%)
5.6
Number of peaks
203 (qval < 1E-05)

Base call quality data from DBCLS SRA