Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Granulocytes
MeSH Description
Leukocytes with abundant granules in the cytoplasm. They are divided into three groups according to the staining properties of the granules: neutrophilic, eosinophilic, and basophilic. Mature granulocytes are the NEUTROPHILS; EOSINOPHILS; and BASOPHILS.

Attributes by original data submitter

Sample

source_name
Gr1dim Mac1+ granulocytic progenitor cells
cell type
Bone marrow derived Gr1dim Mac1+ granulocytic progenitor cells
strain
C57BL/6/SV129
genotype/variation
Lsd1fl/fl Mx1Cre (knockout)
chip antibody
none

Sequenced DNA Library

library_name
GSM994240: Input_Gr1dim_Lsd1_KO_Illumina
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
212951960
Reads aligned (%)
95.2
Duplicates removed (%)
31.5
Number of peaks
255179 (qval < 1E-05)

mm9

Number of total reads
212951960
Reads aligned (%)
95.1
Duplicates removed (%)
31.5
Number of peaks
251433 (qval < 1E-05)

Base call quality data from DBCLS SRA