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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: AR
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1818073
GSM2186462: AR Early G1 ChIP-Seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
AR
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
LNCaP Cell Line
cell line
LNCaP
cell cycle arrest treatment
treated for 24 hours with 0.5μM PD-0332991 +3 hour 10nm DHT
dht treatment
+
chip antibody
AR N-20 (SC-816)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as previously described by Schmidt et al 2009 Illumina library prep kit was utilyzed according to manufacturer's instructions
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
24939785
Reads aligned (%)
93.2
Duplicates removed (%)
8.3
Number of peaks
32562 (qval < 1E-05)
hg19
Number of total reads
24939785
Reads aligned (%)
92.5
Duplicates removed (%)
9.4
Number of peaks
32509 (qval < 1E-05)
Base call quality data from
DBCLS SRA