Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AGO2

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Ago2 IP
cell line
PC-3
chip antibody
anti-Ago2; Wako (4G8)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
108520283
Reads aligned (%)
44.2
Duplicates removed (%)
52.1
Number of peaks
1764 (qval < 1E-05)

hg38

Number of total reads
108520283
Reads aligned (%)
46.0
Duplicates removed (%)
50.4
Number of peaks
1945 (qval < 1E-05)

Base call quality data from DBCLS SRA