SRX181771
GSM995944: Ago2 ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AGO2

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Ago2 IP
cell line
PC-3
chip antibody
anti-Ago2; Wako (4G8)

Sequenced DNA Library

library_name
GSM995944: Ago2 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
108520283
Reads aligned (%)
92.8
Duplicates removed (%)
50.4
Number of peaks
1945 (qval < 1E-05)

hg19

Number of total reads
108520283
Reads aligned (%)
92.2
Duplicates removed (%)
52.1
Number of peaks
1764 (qval < 1E-05)

Base call quality data from DBCLS SRA