Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
AGO1
Cell type Class
Prostate
Cell type
PC-3

Cell type information


Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by Original Data Submitter


source_name
Ago1 IP
cell line
PC-3
chip antibody
anti-Ago1; Wako (2A7)

Metadata from Sequence Read Archive

Library Description


library_name
GSM995943: Ago1 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
118982512
Reads aligned (%)
87.4
Duplicates removed (%)
70.4
Number of peaks
9583 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA