SRX181769
GSM995942: H3k4me3 ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
H3k4me3 IP
cell line
PC-3
chip antibody
anti-H3k4me3; Millipore (#07-473)

Sequenced DNA Library

library_name
GSM995942: H3k4me3 ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
112666747
Reads aligned (%)
95.0
Duplicates removed (%)
25.8
Number of peaks
35453 (qval < 1E-05)

hg19

Number of total reads
112666747
Reads aligned (%)
94.5
Duplicates removed (%)
26.8
Number of peaks
35126 (qval < 1E-05)

Base call quality data from DBCLS SRA