Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
PC-3
Primary Tissue
Prostate
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
Input DNA
cell line
PC-3
chip antibody
none (input)

Sequenced DNA Library

library_name
GSM995941: Input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
84816366
Reads aligned (%)
95.7
Duplicates removed (%)
15.7
Number of peaks
1778 (qval < 1E-05)

hg19

Number of total reads
84816366
Reads aligned (%)
94.9
Duplicates removed (%)
17.4
Number of peaks
1609 (qval < 1E-05)

Base call quality data from DBCLS SRA