Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
G1E-ER4+E2
Tissue
Blood
Lineage
cellLine
Description
Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

Attributes by original data submitter

Sample

source_name
G1E-ER4
biomaterial_provider
Mitch Weiss lab
lab
PSU-m
lab description
Hardison - Penn State University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
G1E-ER4
cell organism
mouse
cell description
Gata1 restored erythroid cells, differentiation induced by estradiol (E2)
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
diffProtD_14hr
treatment description
14 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)
labexpid
Timecourse
age
E0
age description
Embryonic day 0 (stem cell)
control
Input
control description
Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid
wgEncodeEM003203
labexpid
Timecourse
replicate
1
strain
129
strain description
Strain 129, has widely available embryonic stem cells

Sequenced DNA Library

library_name
GSM995440: PSU_ChipSeq_G1E-ER4_Input_diffProtD_14hr_Timecourse
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
29246335
Reads aligned (%)
96.7
Duplicates removed (%)
6.3
Number of peaks
600 (qval < 1E-05)

mm9

Number of total reads
29246335
Reads aligned (%)
96.6
Duplicates removed (%)
6.4
Number of peaks
642 (qval < 1E-05)

Base call quality data from DBCLS SRA