Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

G1E-ER4+E2

Tissue

Blood

Lineage

cellLine

Description

Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

Sample

source_name

G1E-ER4

biomaterial_provider

Mitch Weiss lab

lab

PSU-m

lab description

Hardison - Penn State University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

G1E-ER4

cell organism

mouse

cell description

Gata1 restored erythroid cells, differentiation induced by estradiol (E2)

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

diffProtD_3hr

treatment description

3 hours differentiation of G1E-ER4 cells with 10 nM beta-estradiol (Hardison)

labexpid

Timecourse

age

E0

age description

Embryonic day 0 (stem cell)

control

Input

control description

Control signal which may be subtracted from experimental raw signal before peaks are called.

controlid

wgEncodeEM003206

labexpid

Timecourse

replicate

1

strain

129

strain description

Strain 129, has widely available embryonic stem cells

Sequenced DNA Library

library_name

GSM995437: PSU_ChipSeq_G1E-ER4_Input_diffProtD_3hr_Timecourse

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

30647575

Reads aligned (%)

90.4

Duplicates removed (%)

6.2

Number of peaks

577 (qval < 1E-05)

mm9

Number of total reads

30647575

Reads aligned (%)

90.2

Duplicates removed (%)

6.2

Number of peaks

619 (qval < 1E-05)