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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: Eye-antennal discs
ATCC
MeSH
RIKEN BRC
SRX1816637
GSM2184780: Input-ChIPSeq; Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Larvae
Cell type
Eye-antennal discs
NA
NA
Attributes by original data submitter
Sample
source_name
eye-antennal discs
strain
Bloomington 42269
genotype/variation
Grh-GFP
age
3rd instar
tissue
eye-antennal discs
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated chromatin was extracted using an anti-GFP ab and immunocomplexes were recovered on A/G megnetic beads ChIP libraries were prepared using the Truseq DNA library prep kit (Illumina)
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
23849105
Reads aligned (%)
86.6
Duplicates removed (%)
18.3
Number of peaks
12006 (qval < 1E-05)
dm3
Number of total reads
23849105
Reads aligned (%)
87.0
Duplicates removed (%)
17.2
Number of peaks
11136 (qval < 1E-05)
Base call quality data from
DBCLS SRA