Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GFP

Cell type

Cell type Class
Larvae
Cell type
Eye-antennal discs
NA
NA

Attributes by original data submitter

Sample

source_name
eye-antennal discs
strain
Bloomington 42269
genotype/variation
Grh-GFP
age
3rd instar
tissue
eye-antennal discs
chip antibody
anti-GFP Ab (ab290, Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Sonicated chromatin was extracted using an anti-GFP ab and immunocomplexes were recovered on A/G megnetic beads ChIP libraries were prepared using the Truseq DNA library prep kit (Illumina)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
5631272
Reads aligned (%)
75.8
Duplicates removed (%)
91.5
Number of peaks
2042 (qval < 1E-05)

dm3

Number of total reads
5631272
Reads aligned (%)
76.0
Duplicates removed (%)
90.6
Number of peaks
2231 (qval < 1E-05)

Base call quality data from DBCLS SRA