Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa
strain
CCL-2
chip antibody
Myc

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated whole cells and hSTN1-DNA complexes were isolated with antibody. Libraries were prepared by Otogenetics Corporation (Atlanta, US) according to Illumina's instructions. Libraries were sequenced on the Genome Analyzer following the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
10152354
Reads aligned (%)
155.3
Duplicates removed (%)
0.4
Number of peaks
167 (qval < 1E-05)

hg38

Number of total reads
10152354
Reads aligned (%)
156.6
Duplicates removed (%)
0.3
Number of peaks
282 (qval < 1E-05)

Base call quality data from DBCLS SRA