SRX1813603
GSM2183798: iPS rep2 Myc; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS_Myc
chip antibody
Myc (R&D Systems AF3696)
cell line
iPS cells
protocol
iPS 3s2
passage
20

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
8317625
Reads aligned (%)
76.8
Duplicates removed (%)
38.1
Number of peaks
106 (qval < 1E-05)

hg19

Number of total reads
8317625
Reads aligned (%)
75.8
Duplicates removed (%)
38.6
Number of peaks
91 (qval < 1E-05)

Base call quality data from DBCLS SRA