SRX1813593
GSM2183788: OSvKM rep2 Klf4; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KLF4

Cell type

Cell type Class
Lung
Cell type
MRC-5
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
OSvKM_Klf4
chip antibody
Klf4 (R&D Systems AF3640)
cell line
MRC5 fibroblasts
protocol
Oct4, Sox2-VP16, Klf4 and Myc addition
time
5 days
passage
8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
3406662
Reads aligned (%)
70.3
Duplicates removed (%)
38.6
Number of peaks
33 (qval < 1E-05)

hg38

Number of total reads
3406662
Reads aligned (%)
71.0
Duplicates removed (%)
38.2
Number of peaks
30 (qval < 1E-05)

Base call quality data from DBCLS SRA