Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS_Sox2
chip antibody
Sox2 (R&D Systems AF2018)
cell line
iPS cells
protocol
iPS 3s2
passage
20

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
2340186
Reads aligned (%)
162.7
Duplicates removed (%)
2.3
Number of peaks
34 (qval < 1E-05)

hg38

Number of total reads
2340186
Reads aligned (%)
164.1
Duplicates removed (%)
2.3
Number of peaks
40 (qval < 1E-05)

Base call quality data from DBCLS SRA