Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Lung
Cell type
MRC-5
Tissue
Lung
Cell Type
Fetal
Disease
Normal

Attributes by original data submitter

Sample

source_name
OSvKM_Sox2
chip antibody
Sox2 (R&D Systems AF2018)
cell line
MRC5 fibroblasts
protocol
Oct4, Sox2-VP16, Klf4 and Myc addition
time
5 days
passage
8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
7775928
Reads aligned (%)
87.5
Duplicates removed (%)
38.0
Number of peaks
67 (qval < 1E-05)

hg38

Number of total reads
7775928
Reads aligned (%)
89.0
Duplicates removed (%)
37.5
Number of peaks
75 (qval < 1E-05)

Base call quality data from DBCLS SRA