SRX1813579
GSM2183774: iPS rep2 Oct4; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS_Oct4
chip antibody
Oct4 (Abcam ab19857 Lot: GR187600-1)
cell line
iPS cells
protocol
iPS 3s2
passage
20

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11859022
Reads aligned (%)
88.1
Duplicates removed (%)
5.7
Number of peaks
532 (qval < 1E-05)

hg19

Number of total reads
11859022
Reads aligned (%)
87.5
Duplicates removed (%)
5.7
Number of peaks
513 (qval < 1E-05)

Base call quality data from DBCLS SRA