SRX1813577
GSM2183772: OSvKM rep2 Oct4; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Lung
Cell type
MRC-5
Tissue
Lung
Cell Type
Fetal
Disease
Normal

Attributes by original data submitter

Sample

source_name
OSvKM_Oct4
chip antibody
Oct4 (Abcam ab19857 Lot: GR187600-1)
cell line
MRC5 fibroblasts
protocol
Oct4, Sox2-VP16, Klf4 and Myc addition
time
5 days
passage
8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
8008304
Reads aligned (%)
117.5
Duplicates removed (%)
21.0
Number of peaks
107 (qval < 1E-05)

hg38

Number of total reads
8008304
Reads aligned (%)
119.1
Duplicates removed (%)
20.8
Number of peaks
109 (qval < 1E-05)

Base call quality data from DBCLS SRA