Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
POU5F1

Cell type

Cell type Class
Lung
Cell type
MRC-5
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
OSvKM_Oct4
chip antibody
Oct4 (Abcam ab19857 Lot: GR187600-1)
cell line
MRC5 fibroblasts
protocol
Oct4, Sox2-VP16, Klf4 and Myc addition
time
5 days
passage
8

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
3235103
Reads aligned (%)
86.7
Duplicates removed (%)
2.8
Number of peaks
73 (qval < 1E-05)

hg19

Number of total reads
3235103
Reads aligned (%)
85.6
Duplicates removed (%)
2.8
Number of peaks
72 (qval < 1E-05)

Base call quality data from DBCLS SRA