Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS_H3K4me3
chip antibody
H3K4me3 (Abcam ab8580 Lot: GR240214-2)
cell line
iPS cells
protocol
iPS 3s2
passage
20

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
4332307
Reads aligned (%)
76.9
Duplicates removed (%)
12.2
Number of peaks
5443 (qval < 1E-05)

hg19

Number of total reads
4332307
Reads aligned (%)
76.6
Duplicates removed (%)
12.2
Number of peaks
5445 (qval < 1E-05)

Base call quality data from DBCLS SRA