SRX1813548
GSM2183743: OSvKM rep1 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
MRC-5
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
OSvKM_H3K4me3
chip antibody
H3K4me3 (Abcam ab8580 Lot: GR240214-2)
cell line
MRC5 fibroblasts
protocol
Oct4, Sox2-VP16, Klf4 and Myc addition
time
5 days
passage
8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6647222
Reads aligned (%)
70.0
Duplicates removed (%)
10.3
Number of peaks
9408 (qval < 1E-05)

hg19

Number of total reads
6647222
Reads aligned (%)
69.6
Duplicates removed (%)
10.4
Number of peaks
9341 (qval < 1E-05)

Base call quality data from DBCLS SRA