Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NME2

Cell type

Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
A549 cells
cell line
A549
tissue
lung carcinoma
chip antibody
anti-nm23-h2 (L-16)
transfected
none

Sequenced DNA Library

library_name
GSM991049: NME2 Chip-seq Replicate 2(before NME2 induced A549)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
7125388
Reads aligned (%)
33.5
Duplicates removed (%)
48.7
Number of peaks
48727 (qval < 1E-05)

hg19

Number of total reads
7125388
Reads aligned (%)
33.4
Duplicates removed (%)
49.0
Number of peaks
48818 (qval < 1E-05)

Base call quality data from DBCLS SRA