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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NME2
wikigenes
PDBj
CellType: A549
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX181192
GSM991049: NME2 Chip-seq Replicate 2(before NME2 induced A549); Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NME2
Cell type
Cell type Class
Lung
Cell type
A549
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
A549 cells
cell line
A549
tissue
lung carcinoma
chip antibody
anti-nm23-h2 (L-16)
transfected
none
Sequenced DNA Library
library_name
GSM991049: NME2 Chip-seq Replicate 2(before NME2 induced A549)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
7125388
Reads aligned (%)
33.5
Duplicates removed (%)
48.7
Number of peaks
48727 (qval < 1E-05)
hg19
Number of total reads
7125388
Reads aligned (%)
33.4
Duplicates removed (%)
49.0
Number of peaks
48818 (qval < 1E-05)
Base call quality data from
DBCLS SRA