SRX180898
GSM992736: Day 8 input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
AT2
NA
NA

Attributes by original data submitter

Sample

source_name
Alveolar Epithelial type 2 (AT2 cell)
Sex
female
cod
anoxia
cell type
in vitro diffrentiated AT1 cells
chip antibody
none

Sequenced DNA Library

library_name
GSM992736: Day 8 input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25220458
Reads aligned (%)
98.3
Duplicates removed (%)
2.1
Number of peaks
926 (qval < 1E-05)

hg19

Number of total reads
25220458
Reads aligned (%)
97.5
Duplicates removed (%)
3.3
Number of peaks
1080 (qval < 1E-05)

Base call quality data from DBCLS SRA