SRX180828
GSM991664: IgG control; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 Human Fetal Lung Fibroblast cell line
chip antibody
Anti-rabbit IgG antibody
chip vendor
Sigma
cell line
IMR90
treatment
none

Sequenced DNA Library

library_name
GSM991664: IgG control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35059793
Reads aligned (%)
84.5
Duplicates removed (%)
34.7
Number of peaks
750 (qval < 1E-05)

hg19

Number of total reads
35059793
Reads aligned (%)
83.9
Duplicates removed (%)
35.9
Number of peaks
1057 (qval < 1E-05)

Base call quality data from DBCLS SRA