SRX1806636
H3K9me3 ChIPSeq of SKOV3 shCEBPB(1) cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Gonad
Cell type
SK-OV-3
Primary Tissue
Ovary
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

isolate
not applicable
age
64
biomaterial_provider
Cancer Biology Research Center, 1095 Jiefang Anv. Wuhan, 430036, China
sex
female
tissue
ovary
cell_line
SKOV3
cell_type
epithelial
disease
adenocarcinoma

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25129058
Reads aligned (%)
98.2
Duplicates removed (%)
5.9
Number of peaks
1731 (qval < 1E-05)

hg19

Number of total reads
25129058
Reads aligned (%)
96.4
Duplicates removed (%)
8.4
Number of peaks
1467 (qval < 1E-05)

Base call quality data from DBCLS SRA