Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX3-1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP
cell type
Human prostate cancer cells
chip antibody
NKX3.1 Santa Cruz (sc-15022)

Sequenced DNA Library

library_name
GSM989640: NKX3.1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
9004895
Reads aligned (%)
89.6
Duplicates removed (%)
6.9
Number of peaks
36731 (qval < 1E-05)

hg38

Number of total reads
9004895
Reads aligned (%)
90.4
Duplicates removed (%)
6.5
Number of peaks
36734 (qval < 1E-05)

Base call quality data from DBCLS SRA