SRX180167
GSM989353: PBX1 LETD; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PBX1

Cell type

Cell type Class
Breast
Cell type
MCF-7-LTED
NA
NA

Attributes by original data submitter

Sample

source_name
Long-term estrogen deprived breast cancer cell line
cell line
MCF7-LTED
antibody
PBX1 monoclonal antibody (M01)
treatment
Untreated

Sequenced DNA Library

library_name
GSM989353: PBX1_LETD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30347788
Reads aligned (%)
98.6
Duplicates removed (%)
15.9
Number of peaks
2870 (qval < 1E-05)

hg19

Number of total reads
30347788
Reads aligned (%)
97.6
Duplicates removed (%)
17.5
Number of peaks
2900 (qval < 1E-05)

Base call quality data from DBCLS SRA