SRX180154
GSM989012: RUNX Input ES; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
mESC derived haematopoietic progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
differentiating murine hematopoietic cells
strain
129P2/OlaHsd
cell type
ES cells
chip antibody
none

Sequenced DNA Library

library_name
GSM989012: RUNX Input ES
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
4753442
Reads aligned (%)
90.3
Duplicates removed (%)
4.4
Number of peaks
122 (qval < 1E-05)

mm9

Number of total reads
4753442
Reads aligned (%)
90.2
Duplicates removed (%)
4.6
Number of peaks
118 (qval < 1E-05)

Base call quality data from DBCLS SRA