Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
STAT1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast tumor
cell line
MCF-7 from NCI-60
antibody
Stat1a p91 sc-345
antibody vendor
Santa Cruz

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with anti-STAT1 antibody

Sequencing Platform

instrument_model
Illumina HiScanSQ

hg19

Number of total reads
16843611
Reads aligned (%)
25.8
Duplicates removed (%)
73.3
Number of peaks
262 (qval < 1E-05)

hg38

Number of total reads
16843611
Reads aligned (%)
27.7
Duplicates removed (%)
71.6
Number of peaks
230 (qval < 1E-05)

Base call quality data from DBCLS SRA