SRX179486
GSM989033: FoxP3+GATA1 FoxP3 ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxp3

Cell type

Cell type Class
Blood
Cell type
Tconv
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells, FLAG-FoxP3+GATA1, FLAG ChIP
strain/background
C57BL/6
age
6-8 weeks
tissue
lymph node
cell type
primary CD4+ Tconv cells
transduced factor
FLAG-FoxP3 + GATA1
chip antibody
anti-FLAG, clone M2
antibody vendor
Sigma
antibody catalog number
F1804

Sequenced DNA Library

library_name
GSM989033: FoxP3+GATA1_FoxP3 ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
36506633
Reads aligned (%)
20.6
Duplicates removed (%)
15.1
Number of peaks
2111 (qval < 1E-05)

mm9

Number of total reads
36506633
Reads aligned (%)
20.5
Duplicates removed (%)
15.4
Number of peaks
2139 (qval < 1E-05)

Base call quality data from DBCLS SRA