SRX1794257
GSM2175542: hg19 MLL1 NULL Input 160121; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
HCT116 (MLL1-null)
cell type
Human colorectal tumor (MLL1-null)
passages
Low passages (6-10)
cell line
HCT116
chip antibody
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA after ChIP protocol was isolated using QIAGEN PCR purification kit. 1000 Kit

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35435712
Reads aligned (%)
98.6
Duplicates removed (%)
6.0
Number of peaks
792 (qval < 1E-05)

hg19

Number of total reads
35435712
Reads aligned (%)
97.7
Duplicates removed (%)
6.9
Number of peaks
1008 (qval < 1E-05)

Base call quality data from DBCLS SRA