Antigen

Antigen Class

Unclassified

Antigen

Unclassified

Cell type

Cell type Class

Blood

Cell type

Natural Killer T-Cells

MeSH Description

A specific natural killer T-cell subtype that expresses an invariant T-cell receptor alpha-chain.

Sample

source_name

NKT Streptavidin ChIP-seq

strain background

C57BL/6

genotype/variation

PLZF tg/BirA tg/Valpha14 tg mice

cell type

Thymocytes

chip beads/antibody

Streptavidin beads (Invitrogen; 14204)

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads

112672953

Reads aligned (%)

93.7

Duplicates removed (%)

50.3

Number of peaks

1227 (qval < 1E-05)

mm9

Number of total reads

112672953

Reads aligned (%)

93.4

Duplicates removed (%)

50.2

Number of peaks

1309 (qval < 1E-05)