SRX1787685
GSM2171863: jc1864 siCt input rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 breast cancer cell line
cell line
MCF7
chip antibody
Input siCt
cell type
asynchonous cells
treatment
Nonspecific siRNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq, Schmidt et al, 2009. PMID: 19275951 After amplification, DNA was extracted using QIAgen MinElute gel extraction kit.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
83785476
Reads aligned (%)
95.7
Duplicates removed (%)
4.1
Number of peaks
573 (qval < 1E-05)

hg19

Number of total reads
83785476
Reads aligned (%)
95.1
Duplicates removed (%)
5.0
Number of peaks
573 (qval < 1E-05)

Base call quality data from DBCLS SRA