Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 breast cancer cell line
cell line
MCF7
chip antibody
anti-FOXA1 (ab5089) Abcam
cell type
asynchonous cells
treatment
Nonspecific siRNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq, Schmidt et al, 2009. PMID: 19275942 After amplification, DNA was extracted using QIAgen MinElute gel extraction kit.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
20229559
Reads aligned (%)
97.6
Duplicates removed (%)
3.2
Number of peaks
26496 (qval < 1E-05)

hg19

Number of total reads
20229559
Reads aligned (%)
96.9
Duplicates removed (%)
4.1
Number of peaks
26457 (qval < 1E-05)

Base call quality data from DBCLS SRA