SRX1787653
GSM2171831: jc1856 siCt FOXA1 Rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7 breast cancer cell line
cell line
MCF7
chip antibody
anti-FOXA1 (ab5089) Abcam
cell type
asynchonous cells
treatment
Nonspecific siRNA

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIPseq, Schmidt et al, 2009. PMID: 19275941 After amplification, DNA was extracted using QIAgen MinElute gel extraction kit.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
63788686
Reads aligned (%)
91.8
Duplicates removed (%)
6.9
Number of peaks
39443 (qval < 1E-05)

hg19

Number of total reads
63788686
Reads aligned (%)
91.2
Duplicates removed (%)
8.0
Number of peaks
40207 (qval < 1E-05)

Base call quality data from DBCLS SRA