SRX178465
GSM987810: pro-B, c-Myc ChIP seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Myc

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
progenitor B
cell type
Rag1 deficient pro-B
chip antibody
c-Myc (sc764x, Santa Cruz), lot# H0107
chip antibody manufacturer
Santa Cruz
genetic background
C57bl/6
genotype
Rag1-/-

Sequenced DNA Library

library_name
GSM987810: pro-B, c-Myc ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7971847
Reads aligned (%)
67.6
Duplicates removed (%)
9.0
Number of peaks
390 (qval < 1E-05)

mm9

Number of total reads
7971847
Reads aligned (%)
67.5
Duplicates removed (%)
9.5
Number of peaks
398 (qval < 1E-05)

Base call quality data from DBCLS SRA