SRX178461
GSM987806: pro-B, Rad21 ChIP seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rad21

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
progenitor B
cell type
Rag1 deficient pro-B
chip antibody
Rad21 (ab992, Abcam), lot# GR12688-4
chip antibody manufacturer
Abcam
genetic background
C57bl/6
genotype
Rag1-/-

Sequenced DNA Library

library_name
GSM987806: pro-B, Rad21 ChIP seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22130782
Reads aligned (%)
77.9
Duplicates removed (%)
11.2
Number of peaks
10100 (qval < 1E-05)

mm9

Number of total reads
22130782
Reads aligned (%)
77.7
Duplicates removed (%)
11.3
Number of peaks
10150 (qval < 1E-05)

Base call quality data from DBCLS SRA