Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NEDD4

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7
cell type
human breast adenocarcinoma cell line
passages
8-13
cell line
MCF7
chip antibody
anti-NEDD4 (D17, sc-14482, Santa Cruz Biotechnology)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
37823169
Reads aligned (%)
90.3
Duplicates removed (%)
6.8
Number of peaks
1138 (qval < 1E-05)

hg38

Number of total reads
37823169
Reads aligned (%)
92.5
Duplicates removed (%)
5.3
Number of peaks
966 (qval < 1E-05)

Base call quality data from DBCLS SRA