SRX1771658
GSM2157530: Input#1+2+3 Sample#1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Input#1+2+3
genotype
wild type
age
6 weeks
treated with
beta-naphthoflavone for 6 weeks
cell type
small intestinal crypts
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Protein A-G magnetic beads (Dynabeads, Thermo Fisher Scientific) were used to pull down immunocomplexes. Illumina compatible libraries were prepared using Diagenode's MicroPlex v2 Library Preparation™ kit.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
2771916
Reads aligned (%)
96.9
Duplicates removed (%)
9.6
Number of peaks
62 (qval < 1E-05)

mm9

Number of total reads
2771916
Reads aligned (%)
96.7
Duplicates removed (%)
10.1
Number of peaks
54 (qval < 1E-05)

Base call quality data from DBCLS SRA