SRX176886
GSM986089: ZR751 siNT ER E2 r1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
ZR-75-1
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
ZR751_siNT_ER_estrogen
cell line
ZR751
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
genotype/variation
negative control
tranfected with
AllStars Negative Control siRNA (Cat nr:1027281, Qiagen)
chip antibody
anti-ERa
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986089: ZR751_siNT_ER_E2_r1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35754325
Reads aligned (%)
98.9
Duplicates removed (%)
2.5
Number of peaks
2337 (qval < 1E-05)

hg19

Number of total reads
35754325
Reads aligned (%)
97.9
Duplicates removed (%)
3.9
Number of peaks
2287 (qval < 1E-05)

Base call quality data from DBCLS SRA