Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: EP300
wikigenes
PDBj
CellType: MCF-7
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX176885
GSM986088: siGATA p300 Veh r2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
EP300
Cell type
Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
siGATA_p300_Veh
cell line
MCF-7
cell type
breast cancer cells
stimulated with
Vehicle
genotype/variation
GATA knockdown
tranfected with
ON-TARGET plus siRNA J-0033781-09, siGATA3-Custom-1, siGATA3-Custom-2
chip antibody
anti-p300
chip antibody vendor
Santa Cruz
Sequenced DNA Library
library_name
GSM986088: siGATA_p300_Veh_r2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
36413523
Reads aligned (%)
91.6
Duplicates removed (%)
5.8
Number of peaks
31072 (qval < 1E-05)
hg38
Number of total reads
36413523
Reads aligned (%)
93.5
Duplicates removed (%)
4.5
Number of peaks
31171 (qval < 1E-05)
Base call quality data from
DBCLS SRA