SRX176882
GSM986085: siNT p300 E2 r2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
siNT_p300_estrogen
cell line
MCF-7
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
genotype/variation
negative control
tranfected with
AllStars Negative Control siRNA (Cat nr:1027281, Qiagen)
chip antibody
anti-p300
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986085: siNT_p300_E2_r2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35773159
Reads aligned (%)
98.6
Duplicates removed (%)
3.4
Number of peaks
14335 (qval < 1E-05)

hg19

Number of total reads
35773159
Reads aligned (%)
97.8
Duplicates removed (%)
4.8
Number of peaks
14363 (qval < 1E-05)

Base call quality data from DBCLS SRA