SRX176873
GSM986076: GATA3 Veh r5; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GATA3_Veh
cell line
MCF-7
cell type
breast cancer cells
stimulated with
Vehicle
chip antibody
anti-GATA3
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986076: GATA3_Veh_r5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34877195
Reads aligned (%)
97.8
Duplicates removed (%)
9.2
Number of peaks
1194 (qval < 1E-05)

hg19

Number of total reads
34877195
Reads aligned (%)
97.0
Duplicates removed (%)
10.8
Number of peaks
1288 (qval < 1E-05)

Base call quality data from DBCLS SRA