SRX176872
GSM986075: GATA3 E2 r5; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GATA3_estrogen
cell line
MCF-7
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
chip antibody
anti-GATA3
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986075: GATA3_E2_r5
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26415088
Reads aligned (%)
93.5
Duplicates removed (%)
11.7
Number of peaks
822 (qval < 1E-05)

hg19

Number of total reads
26415088
Reads aligned (%)
92.8
Duplicates removed (%)
13.2
Number of peaks
1042 (qval < 1E-05)

Base call quality data from DBCLS SRA