Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GATA3_Veh
cell line
MCF-7
cell type
breast cancer cells
stimulated with
Vehicle
chip antibody
anti-GATA3
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986074: GATA3_Veh_r4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
35673551
Reads aligned (%)
72.3
Duplicates removed (%)
18.9
Number of peaks
5295 (qval < 1E-05)

hg38

Number of total reads
35673551
Reads aligned (%)
74.5
Duplicates removed (%)
17.3
Number of peaks
5842 (qval < 1E-05)

Base call quality data from DBCLS SRA